noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.3.1.3.5) Plots of Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.3.1.3.5.2) Iterating over all combinations of grouping variables

(1.3.1.3.5.2.1) Entire pool of samples

(1.3.1.3.5.2.2) Iterating over Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order

(1.3.1.3.5.2.2.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking

(1.3.1.3.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.3.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.3.1.3.5.2.2.2.1.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.3.5.2.2.2.1.1.0) Table 129. Data table used for plots. Data for all pooled samples. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.5.2.2.2.1.1.0-3234ea42443.1.3.1.3.5.2.2.2.1.1.csv

.record.id	feature	l2fc
MG1.patient	Bacteroides	5.43956
MG10.patient	Bacteroides	0.53699
MG13.patient	Bacteroides	7.55888
MG14.patient	Bacteroides	0.82737
MG16.patient	Bacteroides	0.42375
MG17.patient	Bacteroides	0.35672
MG19.patient	Bacteroides	1.10074
MG2.patient	Bacteroides	0.60619
MG21.patient	Bacteroides	-0.16572
MG22.patient	Bacteroides	0.02192
MG23.patient	Bacteroides	1.75232
MG25.patient	Bacteroides	2.80161
MG3.patient	Bacteroides	0.07520
MG4.patient	Bacteroides	0.14079
MG6.patient	Bacteroides	-0.08941
MG8.patient	Bacteroides	0.49945
MG1.patient	Prevotella	-9.63050
MG10.patient	Prevotella	-36.42311
MG13.patient	Prevotella	-0.97321
MG14.patient	Prevotella	0.87606
MG16.patient	Prevotella	-35.02098
MG17.patient	Prevotella	-5.73852
MG19.patient	Prevotella	33.91631
MG2.patient	Prevotella	-4.13348
MG21.patient	Prevotella	7.66365
MG22.patient	Prevotella	0.00000
MG23.patient	Prevotella	34.95900
MG25.patient	Prevotella	-1.81632
MG3.patient	Prevotella	1.20940
MG4.patient	Prevotella	-33.53198
MG6.patient	Prevotella	2.95417
MG8.patient	Prevotella	-33.20449
MG1.patient	Unclassified_Lachnospiraceae	-2.24786
MG10.patient	Unclassified_Lachnospiraceae	-4.45240
MG13.patient	Unclassified_Lachnospiraceae	-0.63484
MG14.patient	Unclassified_Lachnospiraceae	-0.15790
MG16.patient	Unclassified_Lachnospiraceae	-0.95981
MG17.patient	Unclassified_Lachnospiraceae	0.39292
MG19.patient	Unclassified_Lachnospiraceae	-2.79985
MG2.patient	Unclassified_Lachnospiraceae	0.15730
MG21.patient	Unclassified_Lachnospiraceae	-4.38109
MG22.patient	Unclassified_Lachnospiraceae	-1.11649
MG23.patient	Unclassified_Lachnospiraceae	-4.05681
MG25.patient	Unclassified_Lachnospiraceae	-41.54236
MG3.patient	Unclassified_Lachnospiraceae	-2.04290
MG4.patient	Unclassified_Lachnospiraceae	0.56793
MG6.patient	Unclassified_Lachnospiraceae	-1.05752
MG8.patient	Unclassified_Lachnospiraceae	-3.33560
MG1.patient	Alistipes	-5.38925
MG10.patient	Alistipes	-41.12902
MG13.patient	Alistipes	9.79933
MG14.patient	Alistipes	-2.71272
MG16.patient	Alistipes	1.57362
MG17.patient	Alistipes	-40.09856
MG19.patient	Alistipes	-1.91902
MG2.patient	Alistipes	-39.96518
MG21.patient	Alistipes	-4.83726
MG22.patient	Alistipes	-0.80340
MG23.patient	Alistipes	40.52856
MG25.patient	Alistipes	0.94978
MG3.patient	Alistipes	41.20020
MG4.patient	Alistipes	38.40138
MG6.patient	Alistipes	1.08427
MG8.patient	Alistipes	-37.94145
MG1.patient	Faecalibacterium	-6.09132
MG10.patient	Faecalibacterium	-0.15096
MG13.patient	Faecalibacterium	-0.46197
MG14.patient	Faecalibacterium	-1.86362
MG16.patient	Faecalibacterium	-1.35370
MG17.patient	Faecalibacterium	1.17777
MG19.patient	Faecalibacterium	1.25890
MG2.patient	Faecalibacterium	-0.60113
MG21.patient	Faecalibacterium	1.33745
MG22.patient	Faecalibacterium	0.34536
MG23.patient	Faecalibacterium	1.23739
MG25.patient	Faecalibacterium	0.42464
MG3.patient	Faecalibacterium	-2.00731
MG4.patient	Faecalibacterium	0.08686
MG6.patient	Faecalibacterium	-2.39262
MG8.patient	Faecalibacterium	-2.00653
MG1.patient	Ruminococcus	-6.38925
MG10.patient	Ruminococcus	-38.80775
MG13.patient	Ruminococcus	-1.30659
MG14.patient	Ruminococcus	-5.46858
MG16.patient	Ruminococcus	-1.24772
MG17.patient	Ruminococcus	0.39492
MG19.patient	Ruminococcus	-2.89143
MG2.patient	Ruminococcus	-5.39207
MG21.patient	Ruminococcus	-5.88501
MG22.patient	Ruminococcus	-4.52348
MG23.patient	Ruminococcus	-2.05467
MG25.patient	Ruminococcus	-4.32128
MG3.patient	Ruminococcus	-2.24025
MG4.patient	Ruminococcus	-1.61037
MG6.patient	Ruminococcus	-1.60873
MG8.patient	Ruminococcus	-3.42709
MG1.patient	Unclassified_Ruminococcaceae	-4.28944
MG10.patient	Unclassified_Ruminococcaceae	-4.30882
MG13.patient	Unclassified_Ruminococcaceae	-1.98269
MG14.patient	Unclassified_Ruminococcaceae	-2.24206
MG16.patient	Unclassified_Ruminococcaceae	0.51298
MG17.patient	Unclassified_Ruminococcaceae	-3.29109
MG19.patient	Unclassified_Ruminococcaceae	-0.92898
MG2.patient	Unclassified_Ruminococcaceae	-3.40647
MG21.patient	Unclassified_Ruminococcaceae	-3.06872
MG22.patient	Unclassified_Ruminococcaceae	-2.28738
MG23.patient	Unclassified_Ruminococcaceae	-1.42566
MG25.patient	Unclassified_Ruminococcaceae	-0.74120
MG3.patient	Unclassified_Ruminococcaceae	1.40570
MG4.patient	Unclassified_Ruminococcaceae	4.19952
MG6.patient	Unclassified_Ruminococcaceae	-2.45618
MG8.patient	Unclassified_Ruminococcaceae	-4.73688
MG1.patient	Lachnospiracea_incertae_sedis	-5.13453
MG10.patient	Lachnospiracea_incertae_sedis	-39.20733
MG13.patient	Lachnospiracea_incertae_sedis	-0.96676
MG14.patient	Lachnospiracea_incertae_sedis	-0.53883
MG16.patient	Lachnospiracea_incertae_sedis	-1.29928
MG17.patient	Lachnospiracea_incertae_sedis	-1.02908
MG19.patient	Lachnospiracea_incertae_sedis	-2.02233
MG2.patient	Lachnospiracea_incertae_sedis	-0.80845
MG21.patient	Lachnospiracea_incertae_sedis	-5.57442
MG22.patient	Lachnospiracea_incertae_sedis	-2.14841
MG23.patient	Lachnospiracea_incertae_sedis	-4.80553
MG25.patient	Lachnospiracea_incertae_sedis	-5.97767
MG3.patient	Lachnospiracea_incertae_sedis	-3.73576
MG4.patient	Lachnospiracea_incertae_sedis	-0.34899
MG6.patient	Lachnospiracea_incertae_sedis	-0.83140
MG8.patient	Lachnospiracea_incertae_sedis	-5.06979
MG1.patient	Blautia	-1.24788
MG10.patient	Blautia	-4.17954
MG13.patient	Blautia	-0.86414
MG14.patient	Blautia	0.37184
MG16.patient	Blautia	-0.43135
MG17.patient	Blautia	0.96840
MG19.patient	Blautia	-1.79997
MG2.patient	Blautia	0.04729
MG21.patient	Blautia	-4.32402
MG22.patient	Blautia	-1.21903
MG23.patient	Blautia	-3.96966
MG25.patient	Blautia	-2.96220
MG3.patient	Blautia	-1.55672
MG4.patient	Blautia	-1.21896
MG6.patient	Blautia	-0.67026
MG8.patient	Blautia	-1.14969
MG1.patient	Clostridium_XI	-40.76746
MG10.patient	Clostridium_XI	-35.83815
MG13.patient	Clostridium_XI	-1.70784
MG14.patient	Clostridium_XI	-3.50589
MG16.patient	Clostridium_XI	1.69372
MG17.patient	Clostridium_XI	6.44984
MG19.patient	Clostridium_XI	-1.57757
MG2.patient	Clostridium_XI	2.26344
MG21.patient	Clostridium_XI	-38.08063
MG22.patient	Clostridium_XI	-1.42158
MG23.patient	Clostridium_XI	-1.59528
MG25.patient	Clostridium_XI	2.69885
MG3.patient	Clostridium_XI	-36.82277
MG4.patient	Clostridium_XI	-2.65217
MG6.patient	Clostridium_XI	1.94603
MG8.patient	Clostridium_XI	-5.62433
MG1.patient	Unclassified_Clostridiales	-1.99694
MG10.patient	Unclassified_Clostridiales	-3.82337
MG13.patient	Unclassified_Clostridiales	-1.01523
MG14.patient	Unclassified_Clostridiales	-1.12186
MG16.patient	Unclassified_Clostridiales	0.96831
MG17.patient	Unclassified_Clostridiales	0.34819
MG19.patient	Unclassified_Clostridiales	-4.27797
MG2.patient	Unclassified_Clostridiales	-0.67723
MG21.patient	Unclassified_Clostridiales	-4.31814
MG22.patient	Unclassified_Clostridiales	-0.49656
MG23.patient	Unclassified_Clostridiales	-3.73208
MG25.patient	Unclassified_Clostridiales	-2.78441
MG3.patient	Unclassified_Clostridiales	-1.60336
MG4.patient	Unclassified_Clostridiales	2.76633
MG6.patient	Unclassified_Clostridiales	-1.33314
MG8.patient	Unclassified_Clostridiales	-1.43148
MG1.patient	Erysipelotrichaceae_incertae_sedis	34.18595
MG10.patient	Erysipelotrichaceae_incertae_sedis	0.00000
MG13.patient	Erysipelotrichaceae_incertae_sedis	3.46208
MG14.patient	Erysipelotrichaceae_incertae_sedis	1.29110
MG16.patient	Erysipelotrichaceae_incertae_sedis	-0.14389
MG17.patient	Erysipelotrichaceae_incertae_sedis	2.88314
MG19.patient	Erysipelotrichaceae_incertae_sedis	-35.81582
MG2.patient	Erysipelotrichaceae_incertae_sedis	9.24208
MG21.patient	Erysipelotrichaceae_incertae_sedis	3.60664
MG22.patient	Erysipelotrichaceae_incertae_sedis	3.24366
MG23.patient	Erysipelotrichaceae_incertae_sedis	-1.24739
MG25.patient	Erysipelotrichaceae_incertae_sedis	-34.43505
MG3.patient	Erysipelotrichaceae_incertae_sedis	34.69997
MG4.patient	Erysipelotrichaceae_incertae_sedis	3.89213
MG6.patient	Erysipelotrichaceae_incertae_sedis	-35.16016
MG8.patient	Erysipelotrichaceae_incertae_sedis	-0.50653
MG1.patient	Clostridium_IV	-8.09153
MG10.patient	Clostridium_IV	-39.57503
MG13.patient	Clostridium_IV	1.21210
MG14.patient	Clostridium_IV	-2.94517
MG16.patient	Clostridium_IV	1.09065
MG17.patient	Clostridium_IV	-1.96653
MG19.patient	Clostridium_IV	-1.89928
MG2.patient	Clostridium_IV	-39.00244

(1.3.1.3.5.2.2.2.1.1.1) Widget 141. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.3.5.2.2.2.1.1.1-3233164eddcDynamic.Pivot.Table.html

(1.3.1.3.5.2.2.2.1.1.1) Widget 142. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.3.5.2.2.2.1.1.1-32358c8460Dynamic.Pivot.Table.html

(1.3.1.3.5.2.2.2.1.1.1) Table 130. Summary table. Data for all pooled samples. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.5.2.2.2.1.1.1-323328dbfd6.1.3.1.3.5.2.2.2.1.1.csv

feature	mean	sd	median	incidence
Lachnospiracea_incertae_sedis	-4.9687	9.353	-2.085366	0.0000
Ruminococcus	-5.4237	9.117	-3.159261	0.0625
Bacteroides	1.3679	2.174	0.518220	0.8750
Unclassified_Firmicutes	-6.0441	12.537	-1.874370	0.1250
Unclassified_Lachnospiraceae	-4.2292	10.091	-1.579697	0.1875
Unclassified_Bacteria	-3.6378	9.559	-1.219088	0.1875
Gemmiger	-7.8633	13.531	-2.242574	0.1250
Unclassified_Ruminococcaceae	-1.8155	2.339	-2.264720	0.1875
Blautia	-1.5129	1.593	-1.218997	0.1875
Clostridium_IV	-8.4379	14.956	-2.381344	0.2500
Coprococcus	-13.6961	21.706	-4.344461	0.1875
Unclassified_Clostridiales	-1.5331	1.962	-1.382313	0.1875
Bifidobacterium	-9.7830	27.351	-3.099197	0.3125
Roseburia	-5.4865	12.528	-0.807534	0.3125
Flavonifractor	-3.5387	17.125	1.134826	0.6875
Dorea	-10.0803	16.681	-2.069625	0.2500
Oscillibacter	-7.3852	19.375	-2.212143	0.3750
Unclassified_Bacteroidales	5.3634	12.217	0.797257	0.6875
Barnesiella	-9.2363	19.665	-0.066299	0.1250
Erysipelotrichaceae_incertae_sedis	-0.6751	20.360	2.087115	0.5625
Prevotella	-4.9309	21.572	-1.394765	0.3750
Faecalibacterium	-0.6913	1.928	-0.306461	0.4375
Clostridium_XlVa	-0.7767	2.231	-0.188055	0.3750
Alistipes	-2.5787	27.337	-1.361209	0.4375
Parabacteroides	-4.8593	13.068	0.005331	0.5000
Clostridium_XI	-9.6589	17.091	-1.651564	0.3125
Enterococcus	11.3172	21.211	0.000000	0.4375
Odoribacter	-11.2580	22.483	-0.873077	0.1250
Clostridium_XVIII	-6.5952	14.839	-1.182656	0.4375
Escherichia_Shigella	-10.2233	25.548	-1.750295	0.1875
Clostridium_sensu_stricto	-9.6903	21.759	-0.582315	0.3750
Streptococcus	-6.5536	19.647	-1.577429	0.2500
Sutterella	-5.0749	23.639	-0.874559	0.3125
Unclassified_Prevotellaceae	-4.8227	18.861	0.000000	0.0625
Akkermansia	-0.2141	17.466	0.000000	0.2500
Megamonas	-3.1576	16.711	0.000000	0.0625
Phascolarctobacterium	4.0850	18.284	0.000000	0.3125
Lactobacillus	-4.1650	17.012	0.000000	0.1250
Klebsiella	4.4357	17.423	0.000000	0.2500
Unclassified_Lactobacillales	4.6744	12.913	0.000000	0.1250
Catenibacterium	-2.5324	17.206	0.000000	0.0625

(1.3.1.3.5.2.2.2.1.1.1) Figure 523. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/3234fcacc76.svg.

(1.3.1.3.5.2.2.2.1.1.1) Figure 524. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3236d20bc7a.svg.

(1.3.1.3.5.2.2.2.1.1.1) Figure 525. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32370b5466.svg.

(1.3.1.3.5.2.2.2.1.1.1) Figure 526. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3231cb14904.svg.

(1.3.1.3.5.2.2.2.1.2) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.3.5.2.2.2.1.2.1) Figure 527. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/323734d7c4f.svg.

(1.3.1.3.5.2.2.2.1.2.1) Figure 528. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3231a8cb087.svg.

(1.3.1.3.5.2.2.2.1.2.1) Figure 529. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32361dce064.svg.

(1.3.1.3.5.2.3) Grouping variables age.quant

(1.3.1.3.5.2.4) Iterating over Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order

(1.3.1.3.5.2.4.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking

(1.3.1.3.5.2.4.2) Iterating over dodged vs faceted bars

(1.3.1.3.5.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.3.1.3.5.2.4.2.1.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.3.5.2.4.2.1.1.0) Table 131. Data table used for plots. Data grouped by age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.5.2.4.2.1.1.0-3236ea3a3d0.1.3.1.3.5.2.4.2.1.1.csv

.record.id	age.quant	feature	l2fc
MG1.patient	(15.3,26.4]	Bacteroides	5.43956
MG10.patient	(8.71,15.3]	Bacteroides	0.53699
MG13.patient	(15.3,26.4]	Bacteroides	7.55888
MG14.patient	(15.3,26.4]	Bacteroides	0.82737
MG16.patient	(15.3,26.4]	Bacteroides	0.42375
MG17.patient	(15.3,26.4]	Bacteroides	0.35672
MG19.patient	(6.27,8.71]	Bacteroides	1.10074
MG2.patient	(8.71,15.3]	Bacteroides	0.60619
MG21.patient	(15.3,26.4]	Bacteroides	-0.16572
MG22.patient	(8.71,15.3]	Bacteroides	0.02192
MG23.patient	(6.27,8.71]	Bacteroides	1.75232
MG25.patient	[3.18,6.27]	Bacteroides	2.80161
MG3.patient	(6.27,8.71]	Bacteroides	0.07520
MG4.patient	(6.27,8.71]	Bacteroides	0.14079
MG6.patient	(8.71,15.3]	Bacteroides	-0.08941
MG8.patient	[3.18,6.27]	Bacteroides	0.49945
MG1.patient	(15.3,26.4]	Prevotella	-9.63050
MG10.patient	(8.71,15.3]	Prevotella	-36.42311
MG13.patient	(15.3,26.4]	Prevotella	-0.97321
MG14.patient	(15.3,26.4]	Prevotella	0.87606
MG16.patient	(15.3,26.4]	Prevotella	-35.02098
MG17.patient	(15.3,26.4]	Prevotella	-5.73852
MG19.patient	(6.27,8.71]	Prevotella	33.91631
MG2.patient	(8.71,15.3]	Prevotella	-4.13348
MG21.patient	(15.3,26.4]	Prevotella	7.66365
MG22.patient	(8.71,15.3]	Prevotella	0.00000
MG23.patient	(6.27,8.71]	Prevotella	34.95900
MG25.patient	[3.18,6.27]	Prevotella	-1.81632
MG3.patient	(6.27,8.71]	Prevotella	1.20940
MG4.patient	(6.27,8.71]	Prevotella	-33.53198
MG6.patient	(8.71,15.3]	Prevotella	2.95417
MG8.patient	[3.18,6.27]	Prevotella	-33.20449
MG1.patient	(15.3,26.4]	Unclassified_Lachnospiraceae	-2.24786
MG10.patient	(8.71,15.3]	Unclassified_Lachnospiraceae	-4.45240
MG13.patient	(15.3,26.4]	Unclassified_Lachnospiraceae	-0.63484
MG14.patient	(15.3,26.4]	Unclassified_Lachnospiraceae	-0.15790
MG16.patient	(15.3,26.4]	Unclassified_Lachnospiraceae	-0.95981
MG17.patient	(15.3,26.4]	Unclassified_Lachnospiraceae	0.39292
MG19.patient	(6.27,8.71]	Unclassified_Lachnospiraceae	-2.79985
MG2.patient	(8.71,15.3]	Unclassified_Lachnospiraceae	0.15730
MG21.patient	(15.3,26.4]	Unclassified_Lachnospiraceae	-4.38109
MG22.patient	(8.71,15.3]	Unclassified_Lachnospiraceae	-1.11649
MG23.patient	(6.27,8.71]	Unclassified_Lachnospiraceae	-4.05681
MG25.patient	[3.18,6.27]	Unclassified_Lachnospiraceae	-41.54236
MG3.patient	(6.27,8.71]	Unclassified_Lachnospiraceae	-2.04290
MG4.patient	(6.27,8.71]	Unclassified_Lachnospiraceae	0.56793
MG6.patient	(8.71,15.3]	Unclassified_Lachnospiraceae	-1.05752
MG8.patient	[3.18,6.27]	Unclassified_Lachnospiraceae	-3.33560
MG1.patient	(15.3,26.4]	Alistipes	-5.38925
MG10.patient	(8.71,15.3]	Alistipes	-41.12902
MG13.patient	(15.3,26.4]	Alistipes	9.79933
MG14.patient	(15.3,26.4]	Alistipes	-2.71272
MG16.patient	(15.3,26.4]	Alistipes	1.57362
MG17.patient	(15.3,26.4]	Alistipes	-40.09856
MG19.patient	(6.27,8.71]	Alistipes	-1.91902
MG2.patient	(8.71,15.3]	Alistipes	-39.96518
MG21.patient	(15.3,26.4]	Alistipes	-4.83726
MG22.patient	(8.71,15.3]	Alistipes	-0.80340
MG23.patient	(6.27,8.71]	Alistipes	40.52856
MG25.patient	[3.18,6.27]	Alistipes	0.94978
MG3.patient	(6.27,8.71]	Alistipes	41.20020
MG4.patient	(6.27,8.71]	Alistipes	38.40138
MG6.patient	(8.71,15.3]	Alistipes	1.08427
MG8.patient	[3.18,6.27]	Alistipes	-37.94145
MG1.patient	(15.3,26.4]	Faecalibacterium	-6.09132
MG10.patient	(8.71,15.3]	Faecalibacterium	-0.15096
MG13.patient	(15.3,26.4]	Faecalibacterium	-0.46197
MG14.patient	(15.3,26.4]	Faecalibacterium	-1.86362
MG16.patient	(15.3,26.4]	Faecalibacterium	-1.35370
MG17.patient	(15.3,26.4]	Faecalibacterium	1.17777
MG19.patient	(6.27,8.71]	Faecalibacterium	1.25890
MG2.patient	(8.71,15.3]	Faecalibacterium	-0.60113
MG21.patient	(15.3,26.4]	Faecalibacterium	1.33745
MG22.patient	(8.71,15.3]	Faecalibacterium	0.34536
MG23.patient	(6.27,8.71]	Faecalibacterium	1.23739
MG25.patient	[3.18,6.27]	Faecalibacterium	0.42464
MG3.patient	(6.27,8.71]	Faecalibacterium	-2.00731
MG4.patient	(6.27,8.71]	Faecalibacterium	0.08686
MG6.patient	(8.71,15.3]	Faecalibacterium	-2.39262
MG8.patient	[3.18,6.27]	Faecalibacterium	-2.00653
MG1.patient	(15.3,26.4]	Ruminococcus	-6.38925
MG10.patient	(8.71,15.3]	Ruminococcus	-38.80775
MG13.patient	(15.3,26.4]	Ruminococcus	-1.30659
MG14.patient	(15.3,26.4]	Ruminococcus	-5.46858
MG16.patient	(15.3,26.4]	Ruminococcus	-1.24772
MG17.patient	(15.3,26.4]	Ruminococcus	0.39492
MG19.patient	(6.27,8.71]	Ruminococcus	-2.89143
MG2.patient	(8.71,15.3]	Ruminococcus	-5.39207
MG21.patient	(15.3,26.4]	Ruminococcus	-5.88501
MG22.patient	(8.71,15.3]	Ruminococcus	-4.52348
MG23.patient	(6.27,8.71]	Ruminococcus	-2.05467
MG25.patient	[3.18,6.27]	Ruminococcus	-4.32128
MG3.patient	(6.27,8.71]	Ruminococcus	-2.24025
MG4.patient	(6.27,8.71]	Ruminococcus	-1.61037
MG6.patient	(8.71,15.3]	Ruminococcus	-1.60873
MG8.patient	[3.18,6.27]	Ruminococcus	-3.42709
MG1.patient	(15.3,26.4]	Unclassified_Ruminococcaceae	-4.28944
MG10.patient	(8.71,15.3]	Unclassified_Ruminococcaceae	-4.30882
MG13.patient	(15.3,26.4]	Unclassified_Ruminococcaceae	-1.98269
MG14.patient	(15.3,26.4]	Unclassified_Ruminococcaceae	-2.24206
MG16.patient	(15.3,26.4]	Unclassified_Ruminococcaceae	0.51298
MG17.patient	(15.3,26.4]	Unclassified_Ruminococcaceae	-3.29109
MG19.patient	(6.27,8.71]	Unclassified_Ruminococcaceae	-0.92898
MG2.patient	(8.71,15.3]	Unclassified_Ruminococcaceae	-3.40647
MG21.patient	(15.3,26.4]	Unclassified_Ruminococcaceae	-3.06872
MG22.patient	(8.71,15.3]	Unclassified_Ruminococcaceae	-2.28738
MG23.patient	(6.27,8.71]	Unclassified_Ruminococcaceae	-1.42566
MG25.patient	[3.18,6.27]	Unclassified_Ruminococcaceae	-0.74120
MG3.patient	(6.27,8.71]	Unclassified_Ruminococcaceae	1.40570
MG4.patient	(6.27,8.71]	Unclassified_Ruminococcaceae	4.19952
MG6.patient	(8.71,15.3]	Unclassified_Ruminococcaceae	-2.45618
MG8.patient	[3.18,6.27]	Unclassified_Ruminococcaceae	-4.73688
MG1.patient	(15.3,26.4]	Lachnospiracea_incertae_sedis	-5.13453
MG10.patient	(8.71,15.3]	Lachnospiracea_incertae_sedis	-39.20733
MG13.patient	(15.3,26.4]	Lachnospiracea_incertae_sedis	-0.96676
MG14.patient	(15.3,26.4]	Lachnospiracea_incertae_sedis	-0.53883
MG16.patient	(15.3,26.4]	Lachnospiracea_incertae_sedis	-1.29928
MG17.patient	(15.3,26.4]	Lachnospiracea_incertae_sedis	-1.02908
MG19.patient	(6.27,8.71]	Lachnospiracea_incertae_sedis	-2.02233
MG2.patient	(8.71,15.3]	Lachnospiracea_incertae_sedis	-0.80845
MG21.patient	(15.3,26.4]	Lachnospiracea_incertae_sedis	-5.57442
MG22.patient	(8.71,15.3]	Lachnospiracea_incertae_sedis	-2.14841
MG23.patient	(6.27,8.71]	Lachnospiracea_incertae_sedis	-4.80553
MG25.patient	[3.18,6.27]	Lachnospiracea_incertae_sedis	-5.97767
MG3.patient	(6.27,8.71]	Lachnospiracea_incertae_sedis	-3.73576
MG4.patient	(6.27,8.71]	Lachnospiracea_incertae_sedis	-0.34899
MG6.patient	(8.71,15.3]	Lachnospiracea_incertae_sedis	-0.83140
MG8.patient	[3.18,6.27]	Lachnospiracea_incertae_sedis	-5.06979
MG1.patient	(15.3,26.4]	Blautia	-1.24788
MG10.patient	(8.71,15.3]	Blautia	-4.17954
MG13.patient	(15.3,26.4]	Blautia	-0.86414
MG14.patient	(15.3,26.4]	Blautia	0.37184
MG16.patient	(15.3,26.4]	Blautia	-0.43135
MG17.patient	(15.3,26.4]	Blautia	0.96840
MG19.patient	(6.27,8.71]	Blautia	-1.79997
MG2.patient	(8.71,15.3]	Blautia	0.04729
MG21.patient	(15.3,26.4]	Blautia	-4.32402
MG22.patient	(8.71,15.3]	Blautia	-1.21903
MG23.patient	(6.27,8.71]	Blautia	-3.96966
MG25.patient	[3.18,6.27]	Blautia	-2.96220
MG3.patient	(6.27,8.71]	Blautia	-1.55672
MG4.patient	(6.27,8.71]	Blautia	-1.21896
MG6.patient	(8.71,15.3]	Blautia	-0.67026
MG8.patient	[3.18,6.27]	Blautia	-1.14969
MG1.patient	(15.3,26.4]	Clostridium_XI	-40.76746
MG10.patient	(8.71,15.3]	Clostridium_XI	-35.83815
MG13.patient	(15.3,26.4]	Clostridium_XI	-1.70784
MG14.patient	(15.3,26.4]	Clostridium_XI	-3.50589
MG16.patient	(15.3,26.4]	Clostridium_XI	1.69372
MG17.patient	(15.3,26.4]	Clostridium_XI	6.44984
MG19.patient	(6.27,8.71]	Clostridium_XI	-1.57757
MG2.patient	(8.71,15.3]	Clostridium_XI	2.26344
MG21.patient	(15.3,26.4]	Clostridium_XI	-38.08063
MG22.patient	(8.71,15.3]	Clostridium_XI	-1.42158
MG23.patient	(6.27,8.71]	Clostridium_XI	-1.59528
MG25.patient	[3.18,6.27]	Clostridium_XI	2.69885
MG3.patient	(6.27,8.71]	Clostridium_XI	-36.82277
MG4.patient	(6.27,8.71]	Clostridium_XI	-2.65217
MG6.patient	(8.71,15.3]	Clostridium_XI	1.94603
MG8.patient	[3.18,6.27]	Clostridium_XI	-5.62433
MG1.patient	(15.3,26.4]	Unclassified_Clostridiales	-1.99694
MG10.patient	(8.71,15.3]	Unclassified_Clostridiales	-3.82337
MG13.patient	(15.3,26.4]	Unclassified_Clostridiales	-1.01523
MG14.patient	(15.3,26.4]	Unclassified_Clostridiales	-1.12186
MG16.patient	(15.3,26.4]	Unclassified_Clostridiales	0.96831
MG17.patient	(15.3,26.4]	Unclassified_Clostridiales	0.34819
MG19.patient	(6.27,8.71]	Unclassified_Clostridiales	-4.27797
MG2.patient	(8.71,15.3]	Unclassified_Clostridiales	-0.67723
MG21.patient	(15.3,26.4]	Unclassified_Clostridiales	-4.31814
MG22.patient	(8.71,15.3]	Unclassified_Clostridiales	-0.49656
MG23.patient	(6.27,8.71]	Unclassified_Clostridiales	-3.73208
MG25.patient	[3.18,6.27]	Unclassified_Clostridiales	-2.78441
MG3.patient	(6.27,8.71]	Unclassified_Clostridiales	-1.60336
MG4.patient	(6.27,8.71]	Unclassified_Clostridiales	2.76633
MG6.patient	(8.71,15.3]	Unclassified_Clostridiales	-1.33314
MG8.patient	[3.18,6.27]	Unclassified_Clostridiales	-1.43148
MG1.patient	(15.3,26.4]	Erysipelotrichaceae_incertae_sedis	34.18595
MG10.patient	(8.71,15.3]	Erysipelotrichaceae_incertae_sedis	0.00000
MG13.patient	(15.3,26.4]	Erysipelotrichaceae_incertae_sedis	3.46208
MG14.patient	(15.3,26.4]	Erysipelotrichaceae_incertae_sedis	1.29110
MG16.patient	(15.3,26.4]	Erysipelotrichaceae_incertae_sedis	-0.14389
MG17.patient	(15.3,26.4]	Erysipelotrichaceae_incertae_sedis	2.88314
MG19.patient	(6.27,8.71]	Erysipelotrichaceae_incertae_sedis	-35.81582
MG2.patient	(8.71,15.3]	Erysipelotrichaceae_incertae_sedis	9.24208
MG21.patient	(15.3,26.4]	Erysipelotrichaceae_incertae_sedis	3.60664
MG22.patient	(8.71,15.3]	Erysipelotrichaceae_incertae_sedis	3.24366
MG23.patient	(6.27,8.71]	Erysipelotrichaceae_incertae_sedis	-1.24739
MG25.patient	[3.18,6.27]	Erysipelotrichaceae_incertae_sedis	-34.43505
MG3.patient	(6.27,8.71]	Erysipelotrichaceae_incertae_sedis	34.69997
MG4.patient	(6.27,8.71]	Erysipelotrichaceae_incertae_sedis	3.89213
MG6.patient	(8.71,15.3]	Erysipelotrichaceae_incertae_sedis	-35.16016
MG8.patient	[3.18,6.27]	Erysipelotrichaceae_incertae_sedis	-0.50653
MG1.patient	(15.3,26.4]	Clostridium_IV	-8.09153
MG10.patient	(8.71,15.3]	Clostridium_IV	-39.57503
MG13.patient	(15.3,26.4]	Clostridium_IV	1.21210
MG14.patient	(15.3,26.4]	Clostridium_IV	-2.94517
MG16.patient	(15.3,26.4]	Clostridium_IV	1.09065
MG17.patient	(15.3,26.4]	Clostridium_IV	-1.96653
MG19.patient	(6.27,8.71]	Clostridium_IV	-1.89928
MG2.patient	(8.71,15.3]	Clostridium_IV	-39.00244

(1.3.1.3.5.2.4.2.1.1.1) Widget 143. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.3.5.2.4.2.1.1.1-3235059557cDynamic.Pivot.Table.html

(1.3.1.3.5.2.4.2.1.1.1) Widget 144. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.3.5.2.4.2.1.1.1-3237fea32a6Dynamic.Pivot.Table.html

(1.3.1.3.5.2.4.2.1.1.1) Table 132. Summary table. Data grouped by age.quant. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.5.2.4.2.1.1.1-32341e889ca.1.3.1.3.5.2.4.2.1.1.csv

feature	age.quant	mean	sd	median	incidence
Lachnospiracea_incertae_sedis	[3.18,6.27]	-5.52373	0.64197	-5.523732	0.0000
Lachnospiracea_incertae_sedis	(6.27,8.71]	-2.72815	1.95698	-2.879046	0.0000
Lachnospiracea_incertae_sedis	(8.71,15.3]	-10.74890	18.98263	-1.489904	0.0000
Lachnospiracea_incertae_sedis	(15.3,26.4]	-2.42382	2.28737	-1.164183	0.0000
Ruminococcus	[3.18,6.27]	-3.87419	0.63229	-3.874187	0.0000
Ruminococcus	(6.27,8.71]	-2.19918	0.53181	-2.147458	0.0000
Ruminococcus	(8.71,15.3]	-12.58301	17.55788	-4.957776	0.0000
Ruminococcus	(15.3,26.4]	-3.31704	2.92454	-3.387586	0.1667
Bacteroides	[3.18,6.27]	1.65053	1.62788	1.650529	1.0000
Bacteroides	(6.27,8.71]	0.76726	0.80684	0.620764	1.0000
Bacteroides	(8.71,15.3]	0.26892	0.35357	0.279456	0.7500
Bacteroides	(15.3,26.4]	2.40676	3.25544	0.625563	0.8333
Unclassified_Firmicutes	[3.18,6.27]	-19.50440	25.08532	-19.504401	0.0000
Unclassified_Firmicutes	(6.27,8.71]	-1.99380	1.07177	-1.864920	0.0000
Unclassified_Firmicutes	(8.71,15.3]	-9.51414	19.49944	-0.166411	0.5000
Unclassified_Firmicutes	(15.3,26.4]	-1.94423	1.20725	-2.224541	0.0000
Unclassified_Lachnospiraceae	[3.18,6.27]	-22.43898	27.01626	-22.438977	0.0000
Unclassified_Lachnospiraceae	(6.27,8.71]	-2.08291	1.95268	-2.421379	0.2500
Unclassified_Lachnospiraceae	(8.71,15.3]	-1.61728	1.97915	-1.087007	0.2500
Unclassified_Lachnospiraceae	(15.3,26.4]	-1.33143	1.73863	-0.797322	0.1667
Unclassified_Bacteria	[3.18,6.27]	-0.97230	0.10495	-0.972296	0.0000
Unclassified_Bacteria	(6.27,8.71]	-0.75569	1.57650	-0.601076	0.5000
Unclassified_Bacteria	(8.71,15.3]	-10.60096	19.09363	-1.978435	0.2500
Unclassified_Bacteria	(15.3,26.4]	-1.80570	1.25222	-1.787978	0.0000
Gemmiger	[3.18,6.27]	-2.24257	0.05431	-2.242574	0.0000
Gemmiger	(6.27,8.71]	-8.45911	15.42022	-1.152237	0.0000
Gemmiger	(8.71,15.3]	-19.32490	19.87250	-19.598750	0.0000
Gemmiger	(15.3,26.4]	-1.69872	2.45970	-0.558683	0.3333
Unclassified_Ruminococcaceae	[3.18,6.27]	-2.73904	2.82537	-2.739040	0.0000
Unclassified_Ruminococcaceae	(6.27,8.71]	0.81264	2.57332	0.238356	0.5000
Unclassified_Ruminococcaceae	(8.71,15.3]	-3.11471	0.93615	-2.931326	0.0000
Unclassified_Ruminococcaceae	(15.3,26.4]	-2.39350	1.64289	-2.655390	0.1667
Blautia	[3.18,6.27]	-2.05594	1.28164	-2.055942	0.0000
Blautia	(6.27,8.71]	-2.13633	1.24522	-1.678343	0.0000
Blautia	(8.71,15.3]	-1.50538	1.85664	-0.944644	0.2500
Blautia	(15.3,26.4]	-0.92119	1.85319	-0.647744	0.3333
Clostridium_IV	[3.18,6.27]	-19.10394	23.33599	-19.103937	0.0000
Clostridium_IV	(6.27,8.71]	-0.06010	3.27671	-0.518901	0.5000
Clostridium_IV	(8.71,15.3]	-21.07364	21.04201	-21.279877	0.0000
Clostridium_IV	(15.3,26.4]	-2.04396	3.40735	-1.764907	0.3333
Coprococcus	[3.18,6.27]	-19.19461	27.14528	-19.194614	0.0000
Coprococcus	(6.27,8.71]	-16.39969	21.09235	-16.142248	0.5000
Coprococcus	(8.71,15.3]	-1.20296	28.47097	-2.364726	0.2500
Coprococcus	(15.3,26.4]	-18.38959	18.53503	-18.677707	0.0000
Unclassified_Clostridiales	[3.18,6.27]	-2.10795	0.95667	-2.107948	0.0000
Unclassified_Clostridiales	(6.27,8.71]	-1.71177	3.20064	-2.667722	0.2500
Unclassified_Clostridiales	(8.71,15.3]	-1.58258	1.53650	-1.005187	0.0000
Unclassified_Clostridiales	(15.3,26.4]	-1.18928	1.87061	-1.068548	0.3333
Bifidobacterium	[3.18,6.27]	-20.41070	22.78554	-20.410700	0.0000
Bifidobacterium	(6.27,8.71]	-18.91073	20.52136	-18.487521	0.0000
Bifidobacterium	(8.71,15.3]	-15.50598	21.49465	-16.529695	0.5000
Bifidobacterium	(15.3,26.4]	3.66016	35.43444	15.628131	0.5000
Roseburia	[3.18,6.27]	-20.35862	24.50033	-20.358618	0.0000
Roseburia	(6.27,8.71]	-0.91977	1.50405	-0.541457	0.5000
Roseburia	(8.71,15.3]	-1.58021	2.03323	-1.083410	0.2500
Roseburia	(15.3,26.4]	-6.17788	15.13462	-0.333703	0.3333
Flavonifractor	[3.18,6.27]	-16.58585	23.82836	-16.585853	0.5000
Flavonifractor	(6.27,8.71]	-8.02842	18.58245	0.405012	0.5000
Flavonifractor	(8.71,15.3]	-7.12020	17.45162	1.132556	0.7500
Flavonifractor	(15.3,26.4]	6.19114	12.96960	2.010465	0.8333
Dorea	[3.18,6.27]	-38.01088	1.57883	-38.010879	0.0000
Dorea	(6.27,8.71]	-2.64303	1.42594	-2.746630	0.0000
Dorea	(8.71,15.3]	-9.09078	19.72156	-0.152080	0.2500
Dorea	(15.3,26.4]	-6.38795	15.04051	-0.912080	0.5000
Oscillibacter	[3.18,6.27]	-17.87582	23.41828	-17.875823	0.0000
Oscillibacter	(6.27,8.71]	9.96855	17.76565	1.602837	1.0000
Oscillibacter	(8.71,15.3]	-10.68092	16.29907	-2.727591	0.0000
Oscillibacter	(15.3,26.4]	-13.26045	18.24021	-3.471236	0.3333
Unclassified_Bacteroidales	[3.18,6.27]	3.30838	3.10197	3.308376	1.0000
Unclassified_Bacteroidales	(6.27,8.71]	9.58716	17.61944	1.352096	0.7500
Unclassified_Bacteroidales	(8.71,15.3]	9.32979	18.08817	1.470625	0.7500
Unclassified_Bacteroidales	(15.3,26.4]	0.58830	2.71608	0.004714	0.5000
Barnesiella	[3.18,6.27]	-2.48109	3.50879	-2.481090	0.0000
Barnesiella	(6.27,8.71]	-7.81705	15.63409	0.000000	0.0000
Barnesiella	(8.71,15.3]	-17.70688	20.37051	-17.626214	0.0000
Barnesiella	(15.3,26.4]	-6.78704	26.03041	-0.235068	0.3333
Erysipelotrichaceae_incertae_sedis	[3.18,6.27]	-17.47079	23.99108	-17.470790	0.0000
Erysipelotrichaceae_incertae_sedis	(6.27,8.71]	0.38222	28.88472	1.322369	0.5000
Erysipelotrichaceae_incertae_sedis	(8.71,15.3]	-5.66861	20.03032	1.621828	0.5000
Erysipelotrichaceae_incertae_sedis	(15.3,26.4]	7.54750	13.12924	3.172608	0.8333
Prevotella	[3.18,6.27]	-17.51041	22.19479	-17.510407	0.0000
Prevotella	(6.27,8.71]	9.13818	32.47706	17.562856	0.7500
Prevotella	(8.71,15.3]	-9.40061	18.24801	-2.066739	0.2500
Prevotella	(15.3,26.4]	-7.13725	14.87918	-3.355862	0.3333
Faecalibacterium	[3.18,6.27]	-0.79095	1.71910	-0.790946	0.5000
Faecalibacterium	(6.27,8.71]	0.14396	1.53514	0.662125	0.7500
Faecalibacterium	(8.71,15.3]	-0.69984	1.19289	-0.376042	0.2500
Faecalibacterium	(15.3,26.4]	-1.20923	2.72124	-0.907834	0.3333
Clostridium_XlVa	[3.18,6.27]	-0.96610	0.90860	-0.966097	0.0000
Clostridium_XlVa	(6.27,8.71]	-0.74425	2.32178	-0.704236	0.5000
Clostridium_XlVa	(8.71,15.3]	-1.43724	3.55055	-1.268166	0.2500
Clostridium_XlVa	(15.3,26.4]	-0.29476	1.82298	0.232079	0.5000
Alistipes	[3.18,6.27]	-18.49583	27.50025	-18.495835	0.5000
Alistipes	(6.27,8.71]	29.55278	21.01509	39.464970	0.7500
Alistipes	(8.71,15.3]	-20.20333	23.50840	-20.384294	0.2500
Alistipes	(15.3,26.4]	-6.94414	17.18647	-3.774990	0.3333
Parabacteroides	[3.18,6.27]	-17.78830	29.70008	-17.788302	0.5000
Parabacteroides	(6.27,8.71]	-0.85600	2.66635	-0.283672	0.5000
Parabacteroides	(8.71,15.3]	0.95467	1.16045	1.044701	0.7500
Parabacteroides	(15.3,26.4]	-7.09449	14.76770	-3.244427	0.3333
Clostridium_XI	[3.18,6.27]	-1.46274	5.88538	-1.462743	0.5000
Clostridium_XI	(6.27,8.71]	-10.66195	17.44778	-2.123725	0.0000
Clostridium_XI	(8.71,15.3]	-8.26256	18.45918	0.262225	0.5000
Clostridium_XI	(15.3,26.4]	-12.65304	21.02950	-2.606869	0.3333
Enterococcus	[3.18,6.27]	18.55995	26.24774	18.559955	0.5000
Enterococcus	(6.27,8.71]	0.51252	28.19080	0.000000	0.2500
Enterococcus	(8.71,15.3]	8.95243	17.36220	0.410225	0.5000
Enterococcus	(15.3,26.4]	17.68252	19.66474	16.096011	0.5000
Odoribacter	[3.18,6.27]	-37.46784	0.72017	-37.467840	0.0000
Odoribacter	(6.27,8.71]	0.00000	0.00000	0.000000	0.0000
Odoribacter	(8.71,15.3]	-7.54485	34.99982	-17.219202	0.2500
Odoribacter	(15.3,26.4]	-12.50216	19.80611	-3.465073	0.1667
Clostridium_XVIII	[3.18,6.27]	-36.43418	0.95771	-36.434178	0.0000
Clostridium_XVIII	(6.27,8.71]	-1.58402	3.49353	-2.465212	0.2500
Clostridium_XVIII	(8.71,15.3]	-8.87517	17.62252	-0.570330	0.5000
Clostridium_XVIII	(15.3,26.4]	1.53022	2.67080	2.466362	0.6667
Escherichia_Shigella	[3.18,6.27]	-17.39473	24.59986	-17.394728	0.0000
Escherichia_Shigella	(6.27,8.71]	-8.57857	17.08530	-0.053933	0.0000
Escherichia_Shigella	(8.71,15.3]	-17.21838	19.62630	-18.648570	0.2500
Escherichia_Shigella	(15.3,26.4]	-4.26594	36.41853	-16.794393	0.3333
Clostridium_sensu_stricto	[3.18,6.27]	3.06292	4.27371	3.062921	1.0000
Clostridium_sensu_stricto	(6.27,8.71]	-25.00164	16.68184	-32.900082	0.0000
Clostridium_sensu_stricto	(8.71,15.3]	-8.04956	19.21166	1.092911	0.5000
Clostridium_sensu_stricto	(15.3,26.4]	-4.82770	27.29748	-2.143756	0.3333
Streptococcus	[3.18,6.27]	-16.60225	23.47912	-16.602246	0.0000
Streptococcus	(6.27,8.71]	-19.25696	18.84578	-19.418219	0.0000
Streptococcus	(8.71,15.3]	1.98052	30.19504	3.113469	0.5000
Streptococcus	(15.3,26.4]	-0.42466	3.84233	-1.158606	0.3333
Sutterella	[3.18,6.27]	1.48595	4.57507	1.485946	0.5000
Sutterella	(6.27,8.71]	-9.70591	16.05644	-2.664880	0.0000
Sutterella	(8.71,15.3]	7.67899	38.20019	17.603670	0.5000
Sutterella	(15.3,26.4]	-12.67706	20.20166	-3.769663	0.3333
Unclassified_Prevotellaceae	[3.18,6.27]	-17.87849	25.28400	-17.878487	0.0000
Unclassified_Prevotellaceae	(6.27,8.71]	-0.09389	0.18778	0.000000	0.0000
Unclassified_Prevotellaceae	(8.71,15.3]	-10.04911	20.09823	0.000000	0.0000
Unclassified_Prevotellaceae	(15.3,26.4]	-0.13896	23.72289	-0.775854	0.1667
Akkermansia	[3.18,6.27]	-17.01000	24.05578	-17.010005	0.0000
Akkermansia	(6.27,8.71]	-0.50017	26.69668	-0.199694	0.2500
Akkermansia	(8.71,15.3]	9.70758	16.97455	1.878348	0.7500
Akkermansia	(15.3,26.4]	-1.03928	2.54571	0.000000	0.0000
Megamonas	[3.18,6.27]	0.00000	0.00000	0.000000	0.0000
Megamonas	(6.27,8.71]	-10.07390	19.20790	-0.713773	0.0000
Megamonas	(8.71,15.3]	0.00000	0.00000	0.000000	0.0000
Megamonas	(15.3,26.4]	-1.70439	23.74116	0.000000	0.1667
Phascolarctobacterium	[3.18,6.27]	0.00000	0.00000	0.000000	0.0000
Phascolarctobacterium	(6.27,8.71]	9.41928	17.69751	0.870056	0.5000
Phascolarctobacterium	(8.71,15.3]	-0.07644	0.55543	0.000000	0.2500
Phascolarctobacterium	(15.3,26.4]	4.66480	27.76924	0.000000	0.3333
Lactobacillus	[3.18,6.27]	-16.30977	23.06549	-16.309765	0.0000
Lactobacillus	(6.27,8.71]	0.00000	0.00000	0.000000	0.0000
Lactobacillus	(8.71,15.3]	9.44916	18.89831	0.000000	0.2500
Lactobacillus	(15.3,26.4]	-11.96949	15.91419	-4.091964	0.1667
Klebsiella	[3.18,6.27]	0.00000	0.00000	0.000000	0.0000
Klebsiella	(6.27,8.71]	0.00000	0.00000	0.000000	0.0000
Klebsiella	(8.71,15.3]	0.26668	0.53335	0.000000	0.2500
Klebsiella	(15.3,26.4]	11.65073	28.47034	16.409099	0.5000
Unclassified_Lactobacillales	[3.18,6.27]	0.00000	0.00000	0.000000	0.0000
Unclassified_Lactobacillales	(6.27,8.71]	0.00000	0.00000	0.000000	0.0000
Unclassified_Lactobacillales	(8.71,15.3]	10.64968	21.29936	0.000000	0.2500
Unclassified_Lactobacillales	(15.3,26.4]	5.36534	13.14234	0.000000	0.1667
Catenibacterium	[3.18,6.27]	0.00000	0.00000	0.000000	0.0000
Catenibacterium	(6.27,8.71]	0.00000	0.00000	0.000000	0.0000
Catenibacterium	(8.71,15.3]	0.00000	0.00000	0.000000	0.0000
Catenibacterium	(15.3,26.4]	-6.75297	29.22306	0.000000	0.1667

(1.3.1.3.5.2.4.2.1.1.1) Figure 530. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/32378667b3f.svg.

(1.3.1.3.5.2.4.2.1.1.1) Figure 531. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3234780f9aa.svg.

(1.3.1.3.5.2.4.2.1.1.1) Figure 532. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3231fd5e99b.svg.

(1.3.1.3.5.2.4.2.1.1.1) Figure 533. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323134567df.svg.

(1.3.1.3.5.2.4.2.1.2) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.3.5.2.4.2.1.2.1) Figure 534. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3236ec471b3.svg.

(1.3.1.3.5.2.4.2.1.2.1) Figure 535. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3236d815504.svg.

(1.3.1.3.5.2.4.2.1.2.1) Figure 536. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32310ab8481.svg.

(1.3.1.3.5.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling

(1.3.1.3.5.2.4.2.2.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.3.5.2.4.2.2.1.1) Figure 537. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/323e2c30c2.svg.

(1.3.1.3.5.2.4.2.2.1.1) Figure 538. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32370b0249a.svg.

(1.3.1.3.5.2.4.2.2.1.1) Figure 539. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3231073211c.svg.

(1.3.1.3.5.2.4.2.2.2) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.3.5.2.4.2.2.2.1) Figure 540. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3231875cdd9.svg.

(1.3.1.3.5.2.4.2.2.2.1) Figure 541. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3234200b8f7.svg.

(1.3.1.3.5.2.4.2.2.2.1) Figure 542. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32324eecc5b.svg.